.. _guide: ********** User guide ********** In this section, a brief introduction to working with Myokit is given. The section :ref:`guide/model` describes the way a model is represented in Myokit. This section discusses components, variables, equations and their relationships. In :ref:`guide/model-writing` a complete example of a model implementation is given, including the model definition, a protocol and an embedded script. :ref:`guide/simulations` covers the basics and details of running a simulation. Myokit can work with different visualization tools. A popular choice among Python users is ``Matplotlib``. The section :ref:`guide/matplotlib` covers some basic commands needed to plot your graphs using Matplotlib. .. toctree:: :hidden: model model-writing simulations matplotlib exploring model-debugging examples