API :: Library

The module myokit.lib provides access to a bundle of tools outside the scope of the Myokit core. The lib module is subdivided in a number of submodules detailed in the sections listed below.

• Common Plots
  • cumulative_current()
  • current_arrows()
  • simulation_times()
• Dependency analysis
  • plot_state_dependency_matrix()
  • create_state_dependency_matrix()
  • plot_component_dependency_graph()
  • create_component_dependency_graph()
  • plot_variable_dependency_graph()
  • create_variable_dependency_graph()
  • DiGraph
    • DiGraph.add_edge()
    • DiGraph.add_node()
    • DiGraph.build_from_matrix()
    • DiGraph.cg_layers_dag()
    • DiGraph.layout_layered()
    • DiGraph.matrix()
    • DiGraph.meg_dag()
    • DiGraph.node()
    • DiGraph.path_matrix()
    • DiGraph.remove_node()
    • DiGraph.text()
    • DiGraph.uid_or_node()
  • Node
    • Node.add_edge_to()
    • Node.clear_edges()
    • Node.has_edge_to()
  • plot_digraph()
• Guessing variable meanings
  • add_embedded_protocol()
  • membrane_capacitance()
  • membrane_currents()
  • membrane_potential()
  • remove_embedded_protocol()
  • stimulus_current()
  • stimulus_current_info()
• Hodgkin-Huxley current models
  • Analytical simulation
    • HHModel
      • HHModel.current()
      • HHModel.default_membrane_potential()
      • HHModel.default_parameters()
      • HHModel.default_state()
      • HHModel.from_component()
      • HHModel.function()
      • HHModel.membrane_potential()
      • HHModel.parameters()
      • HHModel.reduced_model()
      • HHModel.states()
      • HHModel.steady_state()
    • HHModelError
    • AnalyticalSimulation
      • AnalyticalSimulation.default_state()
      • AnalyticalSimulation.membrane_potential()
      • AnalyticalSimulation.parameters()
      • AnalyticalSimulation.pre()
      • AnalyticalSimulation.reset()
      • AnalyticalSimulation.run()
      • AnalyticalSimulation.set_constant()
      • AnalyticalSimulation.set_default_state()
      • AnalyticalSimulation.set_membrane_potential()
      • AnalyticalSimulation.set_parameters()
      • AnalyticalSimulation.set_state()
      • AnalyticalSimulation.solve()
      • AnalyticalSimulation.state()
  • Finding and manipulating HH-states
    • convert_hh_states_to_inf_tau_form()
    • has_alpha_beta_form()
    • has_inf_tau_form()
    • get_alpha_and_beta()
    • get_inf_and_tau()
    • get_rl_expression()
• Markov Models
  • Analytical and discrete simulation
    • LinearModel
      • LinearModel.current()
      • LinearModel.default_membrane_potential()
      • LinearModel.default_parameters()
      • LinearModel.default_state()
      • LinearModel.from_component()
      • LinearModel.matrices()
      • LinearModel.membrane_potential()
      • LinearModel.parameters()
      • LinearModel.rates()
      • LinearModel.states()
      • LinearModel.steady_state()
    • LinearModelError
    • AnalyticalSimulation
      • AnalyticalSimulation.current()
      • AnalyticalSimulation.default_state()
      • AnalyticalSimulation.membrane_potential()
      • AnalyticalSimulation.parameters()
      • AnalyticalSimulation.pre()
      • AnalyticalSimulation.reset()
      • AnalyticalSimulation.run()
      • AnalyticalSimulation.set_constant()
      • AnalyticalSimulation.set_default_state()
      • AnalyticalSimulation.set_membrane_potential()
      • AnalyticalSimulation.set_parameters()
      • AnalyticalSimulation.set_state()
      • AnalyticalSimulation.solve()
      • AnalyticalSimulation.state()
    • DiscreteSimulation
      • DiscreteSimulation.default_state()
      • DiscreteSimulation.discretize_state()
      • DiscreteSimulation.membrane_potential()
      • DiscreteSimulation.number_of_channels()
      • DiscreteSimulation.parameters()
      • DiscreteSimulation.pre()
      • DiscreteSimulation.reset()
      • DiscreteSimulation.run()
      • DiscreteSimulation.set_constant()
      • DiscreteSimulation.set_default_state()
      • DiscreteSimulation.set_membrane_potential()
      • DiscreteSimulation.set_parameters()
      • DiscreteSimulation.set_state()
      • DiscreteSimulation.state()
  • Finding Markov models
    • convert_markov_models_to_compact_form()
    • convert_markov_models_to_full_ode_form()
    • find_markov_models()
  • Deprecated
    • MarkovModel
      • MarkovModel.from_component()
• Multi-model functions
  • binding()
  • iterdir()
  • label()
  • scandir()
  • time()
  • unit()