Myokit :: API and User Guide
Introduction
User guide
mmt File syntax
API :: Core
API :: Simulations
API :: Library
API :: Formats
API :: Graphical User Interfaces
API :: Index
Command line tools
Search
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
_
_build_op_map() (myokit.formats.ExpressionWriter method)
_compile() (myokit.CModule method)
(myokit.CppModule method)
_debug_show() (myokit.CModule method)
(myokit.CppModule method)
_debug_write() (myokit.CModule method)
(myokit.CppModule method)
_dict() (myokit.formats.TemplatedRunnableExporter method)
_dir() (myokit.formats.TemplatedRunnableExporter method)
_export() (myokit.CModule method)
(myokit.CppModule method)
_export_inner() (myokit.CModule method)
(myokit.CppModule method)
_source_file() (myokit.CModule method)
(myokit.CppModule method)
_test_writable_dir() (myokit.formats.Exporter method)
_vars() (myokit.formats.TemplatedRunnableExporter method)
A
AbfFile (class in myokit.formats.axon)
AbfImporter (class in myokit.formats.axon)
AbfTab (class in myokit.gui.datalog_viewer)
Abs (class in myokit)
ACos (class in myokit)
action_about() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
action_check_units_strict() (myokit.gui.ide.MyokitIDE method)
action_check_units_tolerant() (myokit.gui.ide.MyokitIDE method)
action_clear() (myokit.gui.explorer.Explorer method)
action_clear_graphs() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_clear_units() (myokit.gui.ide.MyokitIDE method)
action_close() (myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.explorer.Explorer method)
action_comment() (myokit.gui.ide.MyokitIDE method)
action_component_cycles() (myokit.gui.ide.MyokitIDE method)
action_component_dependency_graph() (myokit.gui.ide.MyokitIDE method)
action_copy() (myokit.gui.ide.MyokitIDE method)
action_cut() (myokit.gui.ide.MyokitIDE method)
action_depause_timer() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_draw() (myokit.gui.explorer.Explorer method)
(myokit.gui.vargrapher.VarGrapher method)
action_explore() (myokit.gui.ide.MyokitIDE method)
action_export_model() (myokit.gui.ide.MyokitIDE method)
action_export_runnable() (myokit.gui.ide.MyokitIDE method)
action_extract_colormap_image() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_extract_frame() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_extract_frame_image() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_extract_graphs() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_find() (myokit.gui.ide.MyokitIDE method)
(myokit.gui.source.FindReplaceWidget method)
action_first_var() (myokit.gui.datalog_viewer.DataLogViewer method)
action_format_protocol() (myokit.gui.ide.MyokitIDE method)
action_import_abf_protocol() (myokit.gui.ide.MyokitIDE method)
action_import_model() (myokit.gui.ide.MyokitIDE method)
action_import_model_internal() (myokit.gui.ide.MyokitIDE method)
action_jump_to_error() (myokit.gui.ide.MyokitIDE method)
action_last_var() (myokit.gui.datalog_viewer.DataLogViewer method)
action_license() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
action_model_stats() (myokit.gui.ide.MyokitIDE method)
action_new() (myokit.gui.ide.MyokitIDE method)
action_next_file() (myokit.gui.datalog_viewer.DataLogViewer method)
action_next_frame() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_next_var() (myokit.gui.datalog_viewer.DataLogViewer method)
action_open() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
action_open_recent() (myokit.gui.ide.MyokitIDE method)
action_paste() (myokit.gui.ide.MyokitIDE method)
action_pause_timer() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_prev_file() (myokit.gui.datalog_viewer.DataLogViewer method)
action_prev_var() (myokit.gui.datalog_viewer.DataLogViewer method)
action_preview_protocol() (myokit.gui.ide.MyokitIDE method)
action_recent_file() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_redo() (myokit.gui.ide.MyokitIDE method)
action_replace() (myokit.gui.source.FindReplaceWidget method)
action_replace_all() (myokit.gui.source.FindReplaceWidget method)
action_run() (myokit.gui.explorer.Explorer method)
(myokit.gui.ide.MyokitIDE method)
action_save() (myokit.gui.ide.MyokitIDE method)
action_save_as() (myokit.gui.ide.MyokitIDE method)
action_set_colormap() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_set_frame() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_set_variable() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_start_stop() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_start_timer() (myokit.gui.datablock_viewer.DataBlockViewer method)
action_state_derivatives() (myokit.gui.ide.MyokitIDE method)
action_state_derivatives2() (myokit.gui.ide.MyokitIDE method)
action_state_matrix() (myokit.gui.ide.MyokitIDE method)
action_toggle_navigator() (myokit.gui.ide.MyokitIDE method)
action_trim_whitespace() (myokit.gui.ide.MyokitIDE method)
action_undo() (myokit.gui.ide.MyokitIDE method)
action_validate() (myokit.gui.ide.MyokitIDE method)
action_variable_definition() (myokit.gui.ide.MyokitIDE method)
action_variable_dependencies() (myokit.gui.ide.MyokitIDE method)
action_variable_dependency_graph() (myokit.gui.ide.MyokitIDE method)
action_variable_evaluation() (myokit.gui.ide.MyokitIDE method)
action_variable_graph() (myokit.gui.ide.MyokitIDE method)
action_variable_info() (myokit.gui.ide.MyokitIDE method)
action_variable_users() (myokit.gui.ide.MyokitIDE method)
action_view_model() (myokit.gui.ide.MyokitIDE method)
action_view_protocol() (myokit.gui.ide.MyokitIDE method)
action_view_script() (myokit.gui.ide.MyokitIDE method)
activate() (myokit.gui.source.FindReplaceWidget method)
add() (myokit.gui.ide.TabbedToolBar method)
(myokit.Protocol method)
add_alias() (myokit.Component method)
add_compartment() (myokit.formats.sbml.Model method)
add_component() (myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
(myokit.Model method)
add_component_allow_renaming() (myokit.Model method)
add_connection() (myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
add_edge() (myokit.lib.deps.DiGraph method)
add_edge_to() (myokit.lib.deps.Node method)
add_embedded_protocol() (in module myokit.lib.guess)
add_function() (myokit.Model method)
add_modifier() (myokit.formats.sbml.Reaction method)
add_node() (myokit.lib.deps.DiGraph method)
add_parameter() (myokit.formats.sbml.Model method)
add_product() (myokit.formats.sbml.Reaction method)
add_reactant() (myokit.formats.sbml.Reaction method)
add_reaction() (myokit.formats.sbml.Model method)
add_recent_file() (myokit.gui.ide.MyokitIDE method)
add_species() (myokit.formats.sbml.Model method)
add_step() (myokit.Protocol method)
add_unit() (myokit.formats.sbml.Model method)
add_units() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
add_variable() (myokit.Component method)
(myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
(myokit.Variable method)
(myokit.VarOwner method)
add_variable_allow_renaming() (myokit.Component method)
(myokit.Variable method)
(myokit.VarOwner method)
advance() (myokit.PacingSystem method)
alias() (myokit.Component method)
alias_for() (myokit.Component method)
all_segments_stored() (myokit.formats.heka.Stimulus method)
(myokit.formats.heka.StimulusChannel method)
amplifier_mode() (myokit.formats.heka.StimulusChannel method)
amplifier_state() (myokit.formats.heka.AmplifierStateRecord method)
(myokit.formats.heka.Series method)
amplifier_states() (myokit.formats.heka.Series method)
amplifier_tree() (myokit.formats.heka.PatchMasterFile method)
AmplifierFile (class in myokit.formats.heka)
AmplifierMode (class in myokit.formats.heka)
AmplifierSeries (class in myokit.formats.heka)
AmplifierState (class in myokit.formats.heka)
AmplifierStateRecord (class in myokit.formats.heka)
AnalyticalSimulation (class in myokit.lib.hh)
(class in myokit.lib.markov)
And (class in myokit)
AnnotatableElement (class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
AnsiCCableExporter (class in myokit.formats.ansic)
AnsiCEulerExporter (class in myokit.formats.ansic)
AnsiCExporter (class in myokit.formats.ansic)
AnsiCExpressionWriter (class in myokit.formats.ansic)
apd() (myokit.DataLog method)
append() (myokit.EquationList method)
area_units() (myokit.formats.sbml.Model method)
arguments() (myokit.UserFunction method)
ASin (class in myokit)
assignable() (myokit.formats.sbml.Model method)
assignable_or_csymbol() (myokit.formats.sbml.Model method)
ATan (class in myokit)
AtfFile (class in myokit.formats.axon)
AtfTab (class in myokit.gui.datalog_viewer)
AutoFloatField (class in myokit.gui.datablock_viewer)
available() (myokit.OpenCL static method)
B
base_unit() (myokit.formats.sbml.Model method)
bench_full() (myokit.RhsBenchmarker method)
bench_part() (myokit.RhsBenchmarker method)
Benchmarker (class in myokit)
(class in myokit.tools)
binding() (in module myokit.lib.multi)
(myokit.Model method)
(myokit.Variable method)
bindings() (myokit.Model method)
bindingx() (myokit.Model method)
block1d() (myokit.DataLog method)
block2d() (myokit.DataBlock1d method)
(myokit.DataLog method)
blocktrain() (in module myokit.pacing)
bpm2bcl() (in module myokit.pacing)
bracket() (myokit.Derivative method)
(myokit.Expression method)
(myokit.Function method)
(myokit.InfixExpression method)
(myokit.InitialValue method)
(myokit.Name method)
(myokit.Number method)
(myokit.PartialDerivative method)
(myokit.PrefixExpression method)
build_from_matrix() (myokit.lib.deps.DiGraph method)
C
c_fast() (myokit.formats.heka.AmplifierState method)
c_fast_enabled() (myokit.formats.heka.AmplifierState method)
c_fast_tau() (myokit.formats.heka.AmplifierState method)
c_slow() (myokit.formats.heka.AmplifierState method)
(myokit.formats.heka.Trace method)
c_slow_auto_settings() (myokit.formats.heka.AmplifierState method)
calculate() (myokit.JacobianCalculator method)
calculate_conductance() (myokit.SimulationOpenCL method)
can_add_variable() (myokit.Component method)
(myokit.Variable method)
(myokit.VarOwner method)
can_convert() (myokit.Unit static method)
capture (class in myokit.tools)
cast() (myokit.Quantity method)
CBasedExpressionWriter (class in myokit.formats.ansic)
Ceil (class in myokit)
CellML1Exporter (class in myokit.formats.cellml)
CellML2Exporter (class in myokit.formats.cellml)
CellMLError (class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
CellMLExporter (class in myokit.formats.cellml)
CellMLExpressionWriter (class in myokit.formats.cellml)
CellMLImporter (class in myokit.formats.cellml)
CellMLImporterError (class in myokit.formats.cellml)
CellMLParser (class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
CellMLParsingError (class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
CellMLWriter (class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
cg_layers_dag() (myokit.lib.deps.DiGraph method)
change_copy_model() (myokit.gui.ide.MyokitIDE method)
change_copy_protocol() (myokit.gui.ide.MyokitIDE method)
change_copy_script() (myokit.gui.ide.MyokitIDE method)
change_editor_tab() (myokit.gui.ide.MyokitIDE method)
change_model() (myokit.gui.ide.MyokitIDE method)
change_model_timeout() (myokit.gui.ide.MyokitIDE method)
change_modified_model() (myokit.gui.ide.MyokitIDE method)
change_modified_protocol() (myokit.gui.ide.MyokitIDE method)
change_modified_script() (myokit.gui.ide.MyokitIDE method)
change_protocol() (myokit.gui.ide.MyokitIDE method)
change_redo_model() (myokit.gui.ide.MyokitIDE method)
change_redo_protocol() (myokit.gui.ide.MyokitIDE method)
change_redo_script() (myokit.gui.ide.MyokitIDE method)
change_tool_visibility() (myokit.gui.ide.MyokitIDE method)
change_undo_model() (myokit.gui.ide.MyokitIDE method)
change_undo_protocol() (myokit.gui.ide.MyokitIDE method)
change_undo_script() (myokit.gui.ide.MyokitIDE method)
Channel (class in myokit.formats.axon)
channel() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
channel_count() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
channel_names() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
channel_units() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
ChannelMLError (class in myokit.formats.channelml)
ChannelMLImporter (class in myokit.formats.channelml)
channels() (myokit.formats.wcp.WcpFile method)
characteristic_time() (myokit.Protocol method)
(myokit.ProtocolEvent method)
check_name() (in module myokit)
check_units() (myokit.Model method)
children() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
clamp() (myokit.Variable method)
clarify() (myokit.Unit method)
clean_identifier() (in module myokit.formats.cellml.v1)
(in module myokit.formats.cellml.v2)
clear() (myokit.EquationList method)
(myokit.gui.datablock_viewer.GraphArea method)
(myokit.gui.ide.Console method)
clear_edges() (myokit.lib.deps.Node method)
clone() (myokit.DataLog method)
(myokit.Derivative method)
(myokit.Equation method)
(myokit.Expression method)
(myokit.formats.cellml.v2.Model method)
(myokit.Function method)
(myokit.InfixExpression method)
(myokit.InitialValue method)
(myokit.Model method)
(myokit.Name method)
(myokit.Number method)
(myokit.PartialDerivative method)
(myokit.PrefixExpression method)
(myokit.Protocol method)
(myokit.ProtocolEvent method)
(myokit.TimeSeriesProtocol method)
close() (in module myokit.float)
(myokit.formats.heka.PatchMasterFile method)
(myokit.Unit static method)
close_explorer() (myokit.gui.ide.MyokitIDE method)
close_exponent() (myokit.Unit static method)
closeEvent() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
cmeta_id() (myokit.formats.cellml.v1.AnnotatableElement method)
CModel (class in myokit)
CModule (class in myokit)
code() (myokit.Component method)
(myokit.Equation method)
(myokit.Expression method)
(myokit.Model method)
(myokit.ModelPart method)
(myokit.Protocol method)
(myokit.ProtocolEvent method)
(myokit.Variable method)
ColorMap (class in myokit)
colors() (myokit.DataBlock2d method)
ColumnMetaData (class in myokit)
combine() (myokit.DataBlock2d static method)
combo_changed() (myokit.gui.explorer.Explorer method)
Compartment (class in myokit.formats.sbml)
compartment() (myokit.formats.sbml.Model method)
(myokit.formats.sbml.Species method)
CompilationError (class in myokit)
Compiler (class in myokit)
complete_series() (myokit.formats.heka.Group method)
Component (class in myokit)
(class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
component() (myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.cellml.v2.Variable method)
(myokit.formats.channelml.ChannelMLImporter method)
(myokit.formats.Importer method)
component_cycles() (myokit.Model method)
components() (myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
(myokit.Model method)
Condition (class in myokit)
condition() (myokit.If method)
conditions() (myokit.Piecewise method)
conductance() (myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
connected_variables() (myokit.formats.cellml.v2.Variable method)
connections() (myokit.formats.cellml.v2.Model method)
Console (class in myokit.gui.ide)
constant() (in module myokit.pacing)
contains_type() (myokit.Expression method)
conversion_factor() (myokit.formats.sbml.Model method)
(myokit.formats.sbml.Species method)
(myokit.Unit static method)
convert() (myokit.Number method)
(myokit.Quantity method)
(myokit.Unit static method)
(myokit.UserFunction method)
convert_hh_states_to_inf_tau_form() (in module myokit.lib.hh)
convert_markov_models_to_compact_form() (in module myokit.lib.markov)
convert_markov_models_to_full_ode_form() (in module myokit.lib.markov)
convert_unit() (myokit.Variable method)
copy() (myokit.EquationList method)
Cos (class in myokit)
count() (myokit.EquationList method)
count_components() (myokit.Model method)
count_equations() (myokit.Component method)
(myokit.EquationList method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
count_samples() (myokit.formats.heka.Trace method)
count_states() (myokit.Model method)
count_variables() (myokit.Component method)
(myokit.EquationList method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
CppExpressionWriter (class in myokit.formats.cpp)
CppModule (class in myokit)
crash_inputs() (myokit.Simulation method)
crash_state() (myokit.Simulation method)
create_component_dependency_graph() (in module myokit.lib.deps)
create_graph_tab() (myokit.gui.datalog_viewer.AtfTab method)
(myokit.gui.datalog_viewer.CsvTab method)
(myokit.gui.datalog_viewer.MatTab method)
(myokit.gui.datalog_viewer.TxtTab method)
create_info_tab() (myokit.gui.datalog_viewer.AtfTab method)
create_log_for_interval() (myokit.Protocol method)
create_log_for_times() (myokit.Protocol method)
create_menu() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
create_state_dependency_matrix() (in module myokit.lib.deps)
create_toolbar() (myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
create_unique_names() (myokit.Model method)
create_unit_name() (in module myokit.formats.cellml.v1)
(in module myokit.formats.cellml.v2)
create_variable_dependency_graph() (in module myokit.lib.deps)
cround() (in module myokit.float)
CsvTab (class in myokit.gui.datalog_viewer)
CSymbolVariable (class in myokit.formats.sbml)
CudaExpressionWriter (class in myokit.formats.cuda)
CudaKernelExporter (class in myokit.formats.cuda)
CudaKernelRLExporter (class in myokit.formats.cuda)
cumulative_current() (in module myokit.lib.plots)
current() (myokit.lib.hh.HHModel method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.LinearModel method)
current_arrows() (in module myokit.lib.plots)
current_gain() (myokit.formats.heka.AmplifierState method)
current_info() (myokit.OpenCL static method)
current_item_changed() (myokit.gui.ide.ModelNavigator method)
cursor_changed() (myokit.gui.source.Editor method)
cursor_position() (myokit.gui.source.Editor method)
cv() (myokit.DataBlock1d method)
CyclicalDependencyError (class in myokit)
D
da() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
da_count() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
da_names() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
da_protocol() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
da_units() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
DataBlock1d (class in myokit)
DataBlock2d (class in myokit)
DataBlockReadError (class in myokit)
DataBlockViewer (class in myokit.gui.datablock_viewer)
DataLog (class in myokit)
DataLogReadError (class in myokit)
DataLogViewer (class in myokit.gui.datalog_viewer)
date() (in module myokit)
default_fiber_state() (myokit.FiberTissueSimulation method)
default_membrane_potential() (myokit.lib.hh.HHModel method)
(myokit.lib.markov.LinearModel method)
default_parameters() (myokit.lib.hh.HHModel method)
(myokit.lib.markov.LinearModel method)
default_protocol() (in module myokit)
default_script() (in module myokit)
default_state() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.hh.HHModel method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.lib.markov.LinearModel method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
default_state_sensitivities() (myokit.Simulation method)
default_tissue_state() (myokit.FiberTissueSimulation method)
definition_url() (myokit.formats.sbml.CSymbolVariable method)
deleteLater() (myokit.gui.datalog_viewer.GraphTabWidget method)
demote() (myokit.Variable method)
dependent_expression() (myokit.PartialDerivative method)
depends_on() (myokit.Expression method)
depends_on_state() (myokit.Expression method)
Derivative (class in myokit)
diff() (myokit.Expression method)
DiGraph (class in myokit.lib.deps)
dimension() (myokit.LoggedVariableInfo method)
DiscreteSimulation (class in myokit.lib.markov)
discretize_state() (myokit.lib.markov.DiscreteSimulation method)
display_exception() (myokit.gui.datablock_viewer.DataBlockViewer method)
Divide (class in myokit)
dominant_eigenvalues() (myokit.DataBlock2d method)
(myokit.JacobianTracer method)
DuplicateFunctionArgument (class in myokit)
DuplicateFunctionName (class in myokit)
DuplicateName (class in myokit)
duration() (myokit.formats.heka.Sweep method)
(myokit.formats.heka.Trace method)
(myokit.ProtocolEvent method)
duration_base() (myokit.formats.heka.Segment method)
duration_delta() (myokit.formats.heka.Segment method)
duration_factor() (myokit.formats.heka.Segment method)
duration_increment_mode() (myokit.formats.heka.Segment method)
durations() (myokit.formats.heka.Segment method)
E
EasyMLExporter (class in myokit.formats.easyml)
EasyMLExpressionWriter (class in myokit.formats.easyml)
Editor (class in myokit.gui.source)
eigenvalues() (myokit.DataBlock2d method)
element_with_cmeta_id() (myokit.formats.cellml.v1.Model method)
EndianAwareReader (class in myokit.formats.heka)
enter() (myokit.gui.progress.ProgressBarReporter method)
(myokit.ProgressPrinter method)
(myokit.ProgressReporter method)
(myokit.Timeout method)
eq() (in module myokit.float)
(myokit.formats.ansic.AnsiCExpressionWriter method)
(myokit.formats.ansic.CBasedExpressionWriter method)
(myokit.formats.cellml.CellMLExpressionWriter method)
(myokit.formats.cpp.CppExpressionWriter method)
(myokit.formats.cuda.CudaExpressionWriter method)
(myokit.formats.easyml.EasyMLExpressionWriter method)
(myokit.formats.ExpressionWriter method)
(myokit.formats.latex.LatexExpressionWriter method)
(myokit.formats.mathml.MathMLExpressionWriter method)
(myokit.formats.matlab.MatlabExpressionWriter method)
(myokit.formats.opencl.OpenCLExpressionWriter method)
(myokit.formats.python.NumPyExpressionWriter method)
(myokit.formats.python.PythonExpressionWriter method)
(myokit.formats.stan.StanExpressionWriter method)
(myokit.formats.sympy.SymPyExpressionWriter method)
(myokit.Variable method)
Equal (class in myokit)
equal() (myokit.ModelComparison method)
equal_length_sweeps() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
Equation (class in myokit)
equation() (myokit.formats.cellml.v2.Variable method)
equation_variable() (myokit.formats.cellml.v2.Variable method)
EquationList (class in myokit)
equations() (myokit.Component method)
(myokit.EquationList method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
err() (myokit.tools.capture method)
error_details() (myokit.pype.TemplateEngine method)
eval() (myokit.Expression method)
(myokit.Variable method)
eval_derivatives() (myokit.Simulation method)
eval_state_derivatives() (myokit.Model method)
eval_unit() (myokit.Expression method)
evaluate_derivatives() (myokit.Model method)
(myokit.Simulation method)
event_colormap_selected() (myokit.gui.datablock_viewer.DataBlockViewer method)
event_graph_mouse_move() (myokit.gui.datablock_viewer.DataBlockViewer method)
event_rate_changed() (myokit.gui.datablock_viewer.DataBlockViewer method)
event_variable_selected() (myokit.gui.datablock_viewer.DataBlockViewer method)
event_video_double_click() (myokit.gui.datablock_viewer.DataBlockViewer method)
event_video_mouse_move() (myokit.gui.datablock_viewer.DataBlockViewer method)
event_video_single_click() (myokit.gui.datablock_viewer.DataBlockViewer method)
events() (myokit.Protocol method)
ewriter() (in module myokit.formats)
ewriters() (in module myokit.formats)
(in module myokit.formats.ansic)
(in module myokit.formats.cellml)
(in module myokit.formats.cpp)
(in module myokit.formats.cuda)
(in module myokit.formats.easyml)
(in module myokit.formats.latex)
(in module myokit.formats.mathml)
(in module myokit.formats.matlab)
(in module myokit.formats.opencl)
(in module myokit.formats.python)
(in module myokit.formats.stan)
(in module myokit.formats.sympy)
ex() (myokit.formats.ansic.AnsiCExpressionWriter method)
(myokit.formats.ansic.CBasedExpressionWriter method)
(myokit.formats.cellml.CellMLExpressionWriter method)
(myokit.formats.cpp.CppExpressionWriter method)
(myokit.formats.cuda.CudaExpressionWriter method)
(myokit.formats.easyml.EasyMLExpressionWriter method)
(myokit.formats.ExpressionWriter method)
(myokit.formats.latex.LatexExpressionWriter method)
(myokit.formats.mathml.MathMLExpressionWriter method)
(myokit.formats.matlab.MatlabExpressionWriter method)
(myokit.formats.opencl.OpenCLExpressionWriter method)
(myokit.formats.python.NumPyExpressionWriter method)
(myokit.formats.python.PythonExpressionWriter method)
(myokit.formats.stan.StanExpressionWriter method)
(myokit.formats.sympy.SymPyExpressionReader method)
(myokit.formats.sympy.SymPyExpressionWriter method)
exists() (myokit.ColorMap static method)
exit() (myokit.gui.progress.ProgressBarReporter method)
(myokit.ProgressReporter method)
Exp (class in myokit)
Explorer (class in myokit.gui.explorer)
exponents() (myokit.Unit method)
Exporter (class in myokit.formats)
exporter() (in module myokit.formats)
ExportError (class in myokit)
exporters() (in module myokit.formats)
(in module myokit.formats.ansic)
(in module myokit.formats.cellml)
(in module myokit.formats.cuda)
(in module myokit.formats.easyml)
(in module myokit.formats.html)
(in module myokit.formats.latex)
(in module myokit.formats.matlab)
(in module myokit.formats.opencl)
(in module myokit.formats.python)
(in module myokit.formats.stan)
(in module myokit.formats.xml)
Expression (class in myokit)
expressions_for() (myokit.Model method)
ExpressionWriter (class in myokit.formats)
extend() (myokit.DataLog method)
(myokit.EquationList method)
extent_units() (myokit.formats.sbml.Model method)
F
fiber_shape() (myokit.FiberTissueSimulation method)
fiber_state() (myokit.FiberTissueSimulation method)
FiberTissueSimulation (class in myokit)
filename() (myokit.formats.axon.AbfFile method)
(myokit.formats.axon.AtfFile method)
(myokit.formats.heka.PatchMasterFile method)
(myokit.formats.wcp.WcpFile method)
fileTabChangeEvent() (myokit.gui.datalog_viewer.DataLogViewer method)
filter1() (myokit.formats.heka.AmplifierState method)
find() (myokit.DataLog method)
find_after() (myokit.DataLog method)
find_markov_models() (in module myokit.lib.markov)
find_nan() (myokit.FiberTissueSimulation method)
(myokit.SimulationOpenCL method)
find_units() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v1.Units class method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.cellml.v2.Units class method)
find_units_name() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v1.Units class method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.cellml.v2.Units class method)
FindNanError (class in myokit)
FindReplaceWidget (class in myokit.gui.source)
first() (myokit.gui.datalog_viewer.TabWidget method)
fitInView() (myokit.gui.datablock_viewer.VideoView method)
flatten() (myokit.formats.cellml.v1.CellMLParser method)
Floor (class in myokit)
flush() (myokit.gui.ide.Console method)
focusInEvent() (myokit.gui.datablock_viewer.AutoFloatField method)
fold() (myokit.DataLog method)
format() (myokit.formats.heka.SegmentIncrement method)
(myokit.OpenCLInfo method)
(myokit.OpenCLPlatformInfo method)
(myokit.tools.Benchmarker method)
format_float_dict() (in module myokit)
format_parse_error() (in module myokit)
format_path() (in module myokit)
(in module myokit.tools)
format_state() (myokit.Model method)
format_state_derivatives() (myokit.Model method)
format_warnings() (myokit.Model method)
free_variable() (myokit.formats.cellml.v1.Model method)
freeze() (myokit.gui.datablock_viewer.GraphArea method)
from_component() (myokit.lib.hh.HHModel static method)
(myokit.lib.markov.LinearModel static method)
(myokit.lib.markov.MarkovModel static method)
from_DataLog() (myokit.DataBlock1d static method)
(myokit.DataBlock2d static method)
from_log() (myokit.DataBlock1d static method)
(myokit.DataBlock2d static method)
from_myokit_model() (myokit.formats.cellml.v1.Model static method)
(myokit.formats.cellml.v2.Model static method)
from_path() (myokit.Simulation static method)
Function (class in myokit)
function() (myokit.lib.hh.HHModel method)
G
GenerationError (class in myokit)
geq() (in module myokit.float)
get() (myokit.ColorMap static method)
(myokit.Component method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarOwner method)
get0d() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
get1d() (myokit.DataBlock1d method)
get2d() (myokit.DataBlock2d method)
get_alpha_and_beta() (in module myokit.lib.hh)
get_function() (myokit.Model method)
get_inf_and_tau() (in module myokit.lib.hh)
get_rl_expression() (in module myokit.lib.hh)
get_text() (myokit.gui.source.Editor method)
graph() (myokit.gui.datablock_viewer.GraphArea method)
GraphArea (class in myokit.gui.datablock_viewer)
GraphTabWidget (class in myokit.gui.datalog_viewer)
grid() (myokit.DataBlock1d method)
Group (class in myokit.formats.heka)
group() (myokit.formats.heka.PatchMasterFile method)
H
has_alias() (myokit.Component method)
has_alias_for() (myokit.Component method)
has_alpha_beta_form() (in module myokit.lib.hh)
has_ancestor() (myokit.Component method)
(myokit.ModelPart method)
(myokit.Variable method)
has_children() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
has_component() (myokit.Model method)
has_edge_to() (myokit.lib.deps.Node method)
has_equation() (myokit.formats.cellml.v2.Variable method)
has_equations() (myokit.Component method)
(myokit.EquationList method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
has_inf_tau_form() (in module myokit.lib.hh)
has_initial_value() (myokit.formats.cellml.v2.Variable method)
has_interdependent_components() (myokit.Model method)
has_nan() (myokit.DataLog method)
has_parse_info() (myokit.Model method)
has_rhs() (myokit.formats.cellml.v2.Variable method)
has_variable() (myokit.Component method)
(myokit.EquationList method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
has_variables() (myokit.Component method)
(myokit.EquationList method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
has_warnings() (myokit.Model method)
head() (myokit.Protocol method)
HHModel (class in myokit.lib.hh)
HHModelError (class in myokit.lib.hh)
highlightBlock() (myokit.gui.source.ModelHighlighter method)
(myokit.gui.source.ProtocolHighlighter method)
(myokit.gui.source.ScriptHighlighter method)
hsv_to_rgb() (myokit.ColorMap static method)
html2ascii() (in module myokit.formats.html)
HTMLExporter (class in myokit.formats.html)
I
icon() (in module myokit.gui)
(in module myokit.gui.datablock_viewer)
(in module myokit.gui.ide)
ids() (myokit.LoggedVariableInfo method)
If (class in myokit)
IllegalAliasError (class in myokit)
IllegalReferenceError (class in myokit)
IllegalReferenceInInitialValueError (class in myokit)
image() (myokit.ColorMap static method)
image_grid() (myokit.DataBlock1d method)
images() (myokit.DataBlock2d method)
import_component() (myokit.Model method)
Importer (class in myokit.formats)
importer() (in module myokit.formats)
ImportError (class in myokit)
importers() (in module myokit.formats)
(in module myokit.formats.axon)
(in module myokit.formats.cellml)
(in module myokit.formats.channelml)
(in module myokit.formats.heka)
(in module myokit.formats.sbml)
in_words() (myokit.Protocol method)
(myokit.ProtocolEvent method)
IncompatibleModelError (class in myokit)
IncompatibleUnitError (class in myokit)
independent_expression() (myokit.PartialDerivative method)
index() (myokit.EquationList method)
(myokit.formats.axon.Channel method)
(myokit.Variable method)
indice() (myokit.Variable method)
InfixCondition (class in myokit)
InfixExpression (class in myokit)
info() (myokit.Compiler static method)
(myokit.formats.axon.AtfFile method)
(myokit.formats.wcp.WcpFile method)
(myokit.OpenCL static method)
initial_value() (myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Variable method)
(myokit.formats.sbml.Compartment method)
(myokit.formats.sbml.Parameter method)
(myokit.formats.sbml.Quantity method)
(myokit.formats.sbml.Species method)
(myokit.formats.sbml.SpeciesReference method)
(myokit.Variable method)
initial_value_variable() (myokit.formats.cellml.v2.Variable method)
initial_values() (myokit.Model method)
InitialValue (class in myokit)
inits() (myokit.Model method)
insert() (myokit.EquationList method)
integrate() (myokit.DataLog method)
IntegrityError (class in myokit)
interface() (myokit.formats.cellml.v2.Variable method)
interpolate_at() (myokit.DataLog method)
InvalidBindingError (class in myokit)
InvalidDataLogError (class in myokit)
InvalidFunction (class in myokit)
InvalidLabelError (class in myokit)
InvalidMetaDataNameError (class in myokit)
InvalidNameError (class in myokit)
is2d() (myokit.SimulationOpenCL method)
is_2d() (myokit.SimulationOpenCL method)
is_amount() (myokit.formats.sbml.Species method)
is_ancestor() (myokit.Component method)
(myokit.ModelPart method)
(myokit.Variable method)
is_basic_real_number_string() (in module myokit.formats.cellml.v2)
is_bound() (myokit.Variable method)
is_boundary() (myokit.formats.sbml.Species method)
is_complete() (myokit.formats.heka.Series method)
is_conditional() (myokit.Expression method)
(myokit.If method)
(myokit.Piecewise method)
is_constant() (myokit.Expression method)
(myokit.formats.sbml.Species method)
(myokit.LhsExpression method)
(myokit.Number method)
(myokit.Variable method)
is_derivative() (myokit.Derivative method)
(myokit.Expression method)
is_free() (myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Variable method)
is_identifier() (in module myokit.formats.cellml.v2)
is_infinite() (myokit.Protocol method)
is_integer_string() (in module myokit.formats.cellml.v2)
is_intermediary() (myokit.Variable method)
is_labelled() (myokit.Variable method)
is_literal() (myokit.Expression method)
(myokit.LhsExpression method)
(myokit.Number method)
(myokit.Variable method)
is_local() (myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Variable method)
is_name() (myokit.Expression method)
(myokit.Name method)
is_nested() (myokit.Variable method)
is_number() (myokit.Expression method)
(myokit.Number method)
is_paced() (myokit.SimulationOpenCL method)
is_rate() (myokit.formats.sbml.Compartment method)
(myokit.formats.sbml.Parameter method)
(myokit.formats.sbml.Quantity method)
(myokit.formats.sbml.Species method)
(myokit.formats.sbml.SpeciesReference method)
is_real_number_string() (in module myokit.formats.cellml.v2)
is_referenced() (myokit.Variable method)
is_regular_grid() (myokit.LoggedVariableInfo method)
is_sequence() (myokit.Protocol method)
is_sequence_exception() (myokit.Protocol method)
is_similar() (myokit.Model method)
is_square() (myokit.DataBlock2d method)
is_state() (myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Variable method)
(myokit.Variable method)
is_state_value() (myokit.Expression method)
(myokit.Name method)
is_unbroken_sequence() (myokit.Protocol method)
is_unbroken_sequence_exception() (myokit.Protocol method)
is_valid() (myokit.Model method)
is_valid_identifier() (in module myokit.formats.cellml.v1)
isplit() (myokit.DataLog method)
item_at_text_position() (myokit.Model method)
items() (myokit.formats.axon.AtfFile method)
items0d() (myokit.DataBlock2d method)
items2d() (myokit.DataBlock2d method)
iterdir() (in module myokit.lib.multi)
itrim() (myokit.DataLog method)
itrim_left() (myokit.DataLog method)
itrim_right() (myokit.DataLog method)
J
JacobianCalculator (class in myokit)
jacobians() (myokit.JacobianTracer method)
JacobianTracer (class in myokit)
job() (myokit.ProgressReporter method)
jump_to() (myokit.gui.source.Editor method)
K
keyPressEvent() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.ide.TabbedToolBar method)
(myokit.gui.source.Editor method)
(myokit.gui.source.FindReplaceWidget method)
keys() (myokit.formats.axon.AtfFile method)
(myokit.LoggedVariableInfo method)
keys0d() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
keys1d() (myokit.DataBlock1d method)
keys2d() (myokit.DataBlock2d method)
keys_like() (myokit.DataLog method)
kinetic_law() (myokit.formats.sbml.Reaction method)
L
label() (in module myokit.lib.multi)
(myokit.formats.heka.Group method)
(myokit.formats.heka.Series method)
(myokit.formats.heka.Stimulus method)
(myokit.formats.heka.Sweep method)
(myokit.formats.heka.Trace method)
(myokit.Model method)
(myokit.Variable method)
labels() (myokit.Model method)
labelx() (myokit.Model method)
largest_eigenvalues() (myokit.DataBlock2d method)
(myokit.JacobianTracer method)
last() (myokit.gui.datalog_viewer.TabWidget method)
last_number_of_evaluations() (myokit.Simulation method)
last_number_of_steps() (myokit.Simulation method)
last_state() (myokit.Simulation method)
LatexExpressionWriter (class in myokit.formats.latex)
layout_layered() (myokit.lib.deps.DiGraph method)
len0d() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
len1d() (myokit.DataBlock1d method)
len2d() (myokit.DataBlock2d method)
length() (myokit.DataLog method)
length_units() (myokit.formats.sbml.Model method)
Less (class in myokit)
LessEqual (class in myokit)
level() (myokit.ProtocolEvent method)
levels() (myokit.Protocol method)
lhs (myokit.Equation property)
lhs() (myokit.Variable method)
LhsExpression (class in myokit)
LinearModel (class in myokit.lib.markov)
LinearModelError (class in myokit.lib.markov)
LineNumberArea (class in myokit.gui.source)
list_exponents() (myokit.Unit static method)
ljp() (myokit.formats.heka.AmplifierState method)
load() (in module myokit)
(myokit.DataBlock1d static method)
(myokit.DataBlock2d static method)
(myokit.DataLog static method)
load_abf_file() (myokit.gui.datalog_viewer.DataLogViewer method)
load_atf() (in module myokit.formats.axon)
load_atf_file() (myokit.gui.datalog_viewer.DataLogViewer method)
load_config() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
(myokit.gui.source.FindReplaceWidget method)
load_csv() (myokit.DataLog static method)
load_dat_file() (myokit.gui.datalog_viewer.DataLogViewer method)
load_data_file() (myokit.gui.datablock_viewer.DataBlockViewer method)
load_datalog() (myokit.gui.datalog_viewer.DataLogViewer method)
load_file() (myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
load_mat_file() (myokit.gui.datalog_viewer.DataLogViewer method)
load_model() (in module myokit)
load_protocol() (in module myokit)
load_script() (in module myokit)
load_selection() (myokit.OpenCL static method)
load_selection_bytes() (myokit.OpenCL static method)
load_state() (in module myokit)
(myokit.Model method)
load_state_bin() (in module myokit)
load_txt_file() (myokit.gui.datalog_viewer.DataLogViewer method)
load_wcp_file() (myokit.gui.datalog_viewer.DataLogViewer method)
Log (class in myokit)
log() (myokit.formats.axon.AbfFile method)
(myokit.formats.axon.AtfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
(myokit.gui.datablock_viewer.GraphArea method)
Log10 (class in myokit)
log_for_interval() (myokit.Protocol method)
log_for_times() (myokit.Protocol method)
LoggedVariableInfo (class in myokit)
lvsd() (in module myokit.tools)
M
map_component_dependencies() (myokit.Model method)
map_component_io() (myokit.Model method)
map_deep_dependencies() (myokit.Model method)
map_shallow_dependencies() (myokit.Model method)
map_to_state() (myokit.Model method)
MarkovModel (class in myokit.lib.markov)
MathMLError (class in myokit.formats.mathml)
MathMLExpressionWriter (class in myokit.formats.mathml)
MathMLParser (class in myokit.formats.mathml)
MatlabExporter (class in myokit.formats.matlab)
MatlabExpressionWriter (class in myokit.formats.matlab)
matplotlib_figure() (myokit.formats.axon.AbfFile method)
(myokit.formats.wcp.WcpFile method)
matrices() (myokit.lib.markov.LinearModel method)
matrix() (myokit.lib.deps.DiGraph method)
MatTab (class in myokit.gui.datalog_viewer)
mean() (myokit.RhsBenchmarker method)
mean_std() (myokit.RhsBenchmarker method)
meg_dag() (myokit.lib.deps.DiGraph method)
membrane_capacitance() (in module myokit.lib.guess)
membrane_currents() (in module myokit.lib.guess)
membrane_potential() (in module myokit.lib.guess)
(myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.hh.HHModel method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.lib.markov.LinearModel method)
meta_str() (myokit.formats.axon.AbfFile method)
(myokit.formats.axon.AtfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
MetaDataContainer (class in myokit)
minimumSizeHint() (myokit.gui.datablock_viewer.GraphArea method)
Minus (class in myokit)
MissingRhsError (class in myokit)
MissingTimeVariableError (class in myokit)
Model (class in myokit)
(class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
(class in myokit.formats.sbml)
model() (myokit.Component method)
(myokit.formats.cellml.CellML1Exporter method)
(myokit.formats.cellml.CellML2Exporter method)
(myokit.formats.cellml.CellMLExporter method)
(myokit.formats.cellml.CellMLImporter method)
(myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Component method)
(myokit.formats.cellml.v2.Variable method)
(myokit.formats.channelml.ChannelMLImporter method)
(myokit.formats.easyml.EasyMLExporter method)
(myokit.formats.Exporter method)
(myokit.formats.html.HTMLExporter method)
(myokit.formats.Importer method)
(myokit.formats.latex.PdfExporter method)
(myokit.formats.latex.PosterExporter method)
(myokit.formats.sbml.SBMLImporter method)
(myokit.formats.xml.XMLExporter method)
(myokit.gui.ide.MyokitIDE method)
(myokit.ModelPart method)
(myokit.Variable method)
ModelComparison (class in myokit)
ModelHighlighter (class in myokit.gui.source)
ModelNavigator (class in myokit.gui.ide)
ModelPart (class in myokit)
modifiers() (myokit.formats.sbml.Reaction method)
ModifierSpeciesReference (class in myokit.formats.sbml)
module
myokit
myokit.formats
myokit.formats.ansic
myokit.formats.axon
myokit.formats.cellml
myokit.formats.cellml.v1
myokit.formats.cellml.v2
myokit.formats.channelml
myokit.formats.cpp
myokit.formats.cuda
myokit.formats.easyml
myokit.formats.heka
myokit.formats.html
myokit.formats.latex
myokit.formats.matlab
myokit.formats.opencl
myokit.formats.python
myokit.formats.sbml
myokit.formats.stan
myokit.formats.sympy
myokit.formats.wcp
myokit.formats.xml
myokit.gui
myokit.gui.datablock_viewer
myokit.gui.datalog_viewer
myokit.gui.explorer
myokit.gui.ide
myokit.gui.progress
myokit.gui.source
myokit.gui.vargrapher
myokit.lib
myokit.lib.deps
myokit.lib.guess
myokit.lib.hh
myokit.lib.markov
myokit.lib.multi
myokit.lib.plots
myokit.pacing
myokit.pype
monodomain_conductance() (myokit.SimulationOpenCL method)
More (class in myokit)
MoreEqual (class in myokit)
mouseDoubleClickEvent() (myokit.gui.datablock_viewer.VideoScene method)
mouseMoveEvent() (myokit.gui.datablock_viewer.GraphArea method)
(myokit.gui.datablock_viewer.VideoScene method)
mousePressEvent() (myokit.gui.datablock_viewer.VideoScene method)
move_variable() (myokit.Component method)
(myokit.Variable method)
(myokit.VarOwner method)
multiplier() (myokit.ProtocolEvent method)
(myokit.Unit method)
multiplier_log_10() (myokit.Unit method)
Multiply (class in myokit)
myokit
module
myokit.formats
module
myokit.formats.ansic
module
myokit.formats.axon
module
myokit.formats.cellml
module
myokit.formats.cellml.v1
module
myokit.formats.cellml.v2
module
myokit.formats.channelml
module
myokit.formats.cpp
module
myokit.formats.cuda
module
myokit.formats.easyml
module
myokit.formats.heka
module
myokit.formats.html
module
myokit.formats.latex
module
myokit.formats.matlab
module
myokit.formats.opencl
module
myokit.formats.python
module
myokit.formats.sbml
module
myokit.formats.stan
module
myokit.formats.sympy
module
myokit.formats.wcp
module
myokit.formats.xml
module
myokit.gui
module
myokit.gui.datablock_viewer
module
myokit.gui.datalog_viewer
module
myokit.gui.explorer
module
myokit.gui.ide
module
myokit.gui.progress
module
myokit.gui.source
module
myokit.gui.vargrapher
module
myokit.lib
module
myokit.lib.deps
module
myokit.lib.guess
module
myokit.lib.hh
module
myokit.lib.markov
module
myokit.lib.multi
module
myokit.lib.plots
module
myokit.pacing
module
myokit.pype
module
myokit_log() (myokit.formats.axon.AtfFile method)
(myokit.formats.wcp.WcpFile method)
myokit_model() (myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.sbml.Model method)
myokit_unit() (myokit.formats.cellml.v1.Units method)
(myokit.formats.cellml.v2.Units method)
MyokitApplication (class in myokit.gui)
MyokitError (class in myokit)
MyokitIDE (class in myokit.gui.ide)
N
Name (class in myokit)
name() (myokit.Component method)
(myokit.formats.axon.Channel method)
(myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v1.Units method)
(myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Component method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.cellml.v2.Units method)
(myokit.formats.cellml.v2.Variable method)
(myokit.formats.heka.AmplifierFile method)
(myokit.formats.sbml.Model method)
(myokit.LoggedVariableInfo method)
(myokit.Model method)
(myokit.ModelPart method)
(myokit.Variable method)
names() (myokit.ColorMap static method)
natural_sort_key() (in module myokit.tools)
navigator_item_changed() (myokit.gui.ide.MyokitIDE method)
neighbors() (myokit.SimulationOpenCL method)
neighbours() (myokit.SimulationOpenCL method)
new_file() (myokit.gui.ide.MyokitIDE method)
newton_root() (myokit.JacobianCalculator method)
next() (myokit.gui.datalog_viewer.TabWidget method)
(myokit.ProtocolEvent method)
next_time() (myokit.PacingSystem method)
Node (class in myokit.lib.deps)
node() (myokit.lib.deps.DiGraph method)
normalize() (myokit.ColorMap static method)
NoSupportedDAChannelError (class in myokit.formats.heka)
Not (class in myokit)
NotEqual (class in myokit)
notes() (myokit.formats.sbml.Model method)
npview() (myokit.DataLog method)
Number (class in myokit)
number() (myokit.formats.heka.Group method)
number_of_channels() (myokit.lib.markov.DiscreteSimulation method)
NumericalError (class in myokit)
numpy_writer() (in module myokit)
NumPyExpressionWriter (class in myokit.formats.python)
O
ObjectWithMetaData (class in myokit)
OpenCL (class in myokit)
OpenCLDeviceInfo (class in myokit)
OpenCLExporter (class in myokit.formats.opencl)
OpenCLExpressionWriter (class in myokit.formats.opencl)
OpenCLInfo (class in myokit)
OpenCLPlatformInfo (class in myokit)
OpenCLRLExporter (class in myokit.formats.opencl)
operator_rep() (myokit.Expression method)
Or (class in myokit)
out() (myokit.tools.capture method)
P
pace() (myokit.PacingSystem method)
(myokit.TimeSeriesProtocol method)
paced_cells() (myokit.Simulation1d method)
PacingSystem (class in myokit)
paintEvent() (myokit.gui.datablock_viewer.GraphArea method)
(myokit.gui.source.Editor method)
(myokit.gui.source.LineNumberArea method)
Parameter (class in myokit.formats.sbml)
parameter() (myokit.formats.sbml.Model method)
parameters() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.hh.HHModel method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.lib.markov.LinearModel method)
parent() (myokit.Component method)
(myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
(myokit.formats.heka.TreeNode method)
(myokit.ModelPart method)
(myokit.Variable method)
parse() (in module myokit)
(myokit.formats.cellml.v1.CellMLParser method)
(myokit.formats.cellml.v2.CellMLParser method)
(myokit.formats.mathml.MathMLParser method)
(myokit.formats.sbml.SBMLParser method)
parse_expression() (in module myokit)
parse_file() (in module myokit.formats.cellml.v1)
(in module myokit.formats.cellml.v2)
(myokit.formats.cellml.v1.CellMLParser method)
(myokit.formats.cellml.v2.CellMLParser method)
(myokit.formats.sbml.SBMLParser method)
parse_mathml_etree() (in module myokit.formats.mathml)
parse_mathml_string() (in module myokit.formats.mathml)
parse_model() (in module myokit)
parse_protocol() (in module myokit)
parse_simple() (myokit.Unit static method)
parse_state() (in module myokit)
parse_string() (in module myokit.formats.cellml.v1)
(in module myokit.formats.cellml.v2)
(myokit.formats.cellml.v1.CellMLParser method)
(myokit.formats.cellml.v2.CellMLParser method)
(myokit.formats.sbml.SBMLParser method)
parse_unit() (in module myokit)
parse_unit_row() (myokit.formats.cellml.v1.Units class method)
(myokit.formats.cellml.v2.Units class method)
ParseError (class in myokit)
PartialDerivative (class in myokit)
PatchMasterFile (class in myokit.formats.heka)
PatchMasterImporter (class in myokit.formats.heka)
PatchMasterTab (class in myokit.gui.datalog_viewer)
path() (myokit.formats.axon.AbfFile method)
(myokit.formats.axon.AtfFile method)
(myokit.formats.heka.PatchMasterFile method)
(myokit.formats.wcp.WcpFile method)
path_matrix() (myokit.lib.deps.DiGraph method)
PdfExporter (class in myokit.formats.latex)
period() (myokit.ProtocolEvent method)
pid_hash() (in module myokit)
pieces() (myokit.Piecewise method)
Piecewise (class in myokit)
piecewise() (myokit.If method)
plot() (myokit.formats.wcp.WcpFile method)
plot_component_dependency_graph() (in module myokit.lib.deps)
plot_digraph() (in module myokit.lib.deps)
plot_state_dependency_matrix() (in module myokit.lib.deps)
plot_variable_dependency_graph() (in module myokit.lib.deps)
Plus (class in myokit)
pop() (myokit.EquationList method)
(myokit.Protocol method)
post_export_info() (myokit.formats.ansic.AnsiCCableExporter method)
(myokit.formats.ansic.AnsiCEulerExporter method)
(myokit.formats.ansic.AnsiCExporter method)
(myokit.formats.cellml.CellML1Exporter method)
(myokit.formats.cellml.CellML2Exporter method)
(myokit.formats.cellml.CellMLExporter method)
(myokit.formats.easyml.EasyMLExporter method)
(myokit.formats.Exporter method)
(myokit.formats.html.HTMLExporter method)
(myokit.formats.latex.PdfExporter method)
(myokit.formats.latex.PosterExporter method)
(myokit.formats.matlab.MatlabExporter method)
(myokit.formats.xml.XMLExporter method)
PosterExporter (class in myokit.formats.latex)
Power (class in myokit)
pre() (myokit.FiberTissueSimulation method)
(myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
PrefixCondition (class in myokit)
PrefixExpression (class in myokit)
PrefixMinus (class in myokit)
PrefixPlus (class in myokit)
prepare_log() (in module myokit)
previous() (myokit.gui.datalog_viewer.TabWidget method)
print() (myokit.tools.Benchmarker method)
private_interface() (myokit.formats.cellml.v1.Variable method)
process() (myokit.pype.TemplateEngine method)
products() (myokit.formats.sbml.Reaction method)
ProgressBar (class in myokit.gui.progress)
ProgressBarReporter (class in myokit.gui.progress)
ProgressPrinter (class in myokit)
ProgressReporter (class in myokit)
promote() (myokit.Variable method)
prompt_save_changes() (myokit.gui.ide.MyokitIDE method)
Protocol (class in myokit)
protocol() (myokit.formats.axon.AbfImporter method)
(myokit.formats.heka.PatchMasterImporter method)
(myokit.formats.heka.Stimulus method)
(myokit.formats.heka.StimulusChannel method)
(myokit.formats.Importer method)
(myokit.gui.ide.MyokitIDE method)
ProtocolEvent (class in myokit)
ProtocolEventError (class in myokit)
ProtocolHighlighter (class in myokit.gui.source)
ProtocolParseError (class in myokit)
public_interface() (myokit.formats.cellml.v1.Variable method)
PulsedFile (class in myokit.formats.heka)
pyfunc() (myokit.Expression method)
(myokit.Variable method)
PypeError (class in myokit.pype)
pystr() (myokit.Expression method)
python_writer() (in module myokit)
PythonExporter (class in myokit.formats.python)
PythonExpressionWriter (class in myokit.formats.python)
Q
qname() (myokit.Component method)
(myokit.ModelPart method)
(myokit.Variable method)
qtMonospaceFont() (in module myokit.gui)
Quantity (class in myokit)
(class in myokit.formats.sbml)
Quotient (class in myokit)
R
r_pipette() (myokit.formats.heka.Trace method)
r_seal() (myokit.formats.heka.Trace method)
r_series() (myokit.formats.heka.AmplifierState method)
(myokit.formats.heka.Trace method)
r_series_enabled() (myokit.formats.heka.AmplifierState method)
r_series_fraction() (myokit.formats.heka.AmplifierState method)
r_series_remaining() (myokit.formats.heka.Trace method)
r_series_tau() (myokit.formats.heka.AmplifierState method)
range() (myokit.Protocol method)
rates() (myokit.lib.markov.LinearModel method)
reactants() (myokit.formats.sbml.Reaction method)
Reaction (class in myokit.formats.sbml)
reaction() (myokit.formats.sbml.Model method)
read() (in module myokit.formats.sympy)
(myokit.formats.heka.EndianAwareReader method)
(myokit.formats.heka.TreeNode static method)
read1() (myokit.formats.heka.EndianAwareReader method)
reconstruction() (myokit.formats.heka.Stimulus method)
(myokit.formats.heka.StimulusChannel method)
record_count() (myokit.formats.wcp.WcpFile method)
records() (myokit.formats.wcp.WcpFile method)
reduced_model() (myokit.lib.hh.HHModel method)
references() (myokit.Expression method)
refs_by() (myokit.Variable method)
refs_to() (myokit.Variable method)
register() (myokit.Unit static method)
register_external_ewriter() (in module myokit.formats)
register_external_exporter() (in module myokit.formats)
register_external_importer() (in module myokit.formats)
register_preferred_representation() (myokit.Unit static method)
regularize() (myokit.DataLog method)
Remainder (class in myokit)
remove() (myokit.EquationList method)
remove0d() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
remove1d() (myokit.DataBlock1d method)
remove2d() (myokit.DataBlock2d method)
remove_alias() (myokit.Component method)
remove_aliases_for() (myokit.Component method)
remove_child_variables() (myokit.Variable method)
remove_component() (myokit.Model method)
remove_derivative_references() (myokit.Model method)
remove_embedded_protocol() (in module myokit.lib.guess)
remove_field() (myokit.SimulationOpenCL method)
remove_node() (myokit.lib.deps.DiGraph method)
remove_variable() (myokit.Component method)
(myokit.Variable method)
(myokit.VarOwner method)
rename() (myokit.Variable method)
reorder_state() (myokit.Model method)
replace() (myokit.gui.source.Editor method)
reporter() (myokit.gui.progress.ProgressBar method)
reserve_unique_name_prefix() (myokit.Model method)
reserve_unique_names() (myokit.Model method)
reset() (myokit.FiberTissueSimulation method)
(myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
(myokit.tools.Benchmarker method)
resize() (myokit.gui.datablock_viewer.VideoScene method)
resizeEvent() (myokit.gui.datablock_viewer.GraphArea method)
(myokit.gui.datablock_viewer.VideoView method)
(myokit.gui.source.Editor method)
resolve_interdependent_components() (myokit.Model method)
reverse() (myokit.EquationList method)
rhs (myokit.Equation property)
rhs() (myokit.Derivative method)
(myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Variable method)
(myokit.InitialValue method)
(myokit.LhsExpression method)
(myokit.Name method)
(myokit.PartialDerivative method)
(myokit.Variable method)
rhs_or_initial_value() (myokit.formats.cellml.v1.Variable method)
rhs_variable() (myokit.formats.cellml.v2.Variable method)
RhsBenchmarker (class in myokit)
rmtree() (in module myokit.tools)
round() (in module myokit.float)
run() (in module myokit)
(in module myokit.gui)
(myokit.FiberTissueSimulation method)
(myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
runnable() (myokit.formats.cellml.CellML1Exporter method)
(myokit.formats.cellml.CellML2Exporter method)
(myokit.formats.cellml.CellMLExporter method)
(myokit.formats.easyml.EasyMLExporter method)
(myokit.formats.Exporter method)
(myokit.formats.html.HTMLExporter method)
(myokit.formats.stan.StanExporter method)
(myokit.formats.TemplatedRunnableExporter method)
(myokit.formats.xml.XMLExporter method)
S
sample_count() (myokit.formats.wcp.WcpFile method)
samples() (myokit.formats.heka.Segment method)
sampling_interval() (myokit.formats.heka.Stimulus method)
save() (in module myokit)
(myokit.DataBlock1d method)
(myokit.DataBlock2d method)
(myokit.DataLog method)
save_atf() (in module myokit.formats.axon)
save_config() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.datalog_viewer.DataLogViewer method)
(myokit.gui.ide.MyokitIDE method)
(myokit.gui.source.FindReplaceWidget method)
save_csv() (myokit.DataLog method)
save_file() (myokit.gui.ide.MyokitIDE method)
save_frame_csv() (myokit.DataBlock2d method)
save_frame_grid() (myokit.DataBlock2d method)
save_model() (in module myokit)
save_protocol() (in module myokit)
save_script() (in module myokit)
save_selection() (myokit.OpenCL static method)
save_state() (in module myokit)
(myokit.Model method)
save_state_bin() (in module myokit)
SBMLError (class in myokit.formats.sbml)
SBMLImporter (class in myokit.formats.sbml)
SBMLParser (class in myokit.formats.sbml)
SBMLParsingError (class in myokit.formats.sbml)
scandir() (in module myokit.lib.multi)
schedule() (myokit.Protocol method)
ScriptHighlighter (class in myokit.gui.source)
SectionNotFoundError (class in myokit)
Segment (class in myokit.formats.heka)
segment_class() (myokit.formats.heka.Segment method)
SegmentClass (class in myokit.formats.heka)
SegmentIncrement (class in myokit.formats.heka)
SegmentStorage (class in myokit.formats.heka)
selected_variable() (myokit.gui.ide.MyokitIDE method)
selection_info() (myokit.OpenCL static method)
Series (class in myokit.formats.heka)
series() (myokit.formats.heka.Group method)
set0d() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
set1d() (myokit.DataBlock1d method)
set2d() (myokit.DataBlock2d method)
set_area_units() (myokit.formats.sbml.Model method)
set_binding() (myokit.Variable method)
set_cmeta_id() (myokit.formats.cellml.v1.AnnotatableElement method)
set_condition_function() (myokit.formats.ansic.AnsiCExpressionWriter method)
(myokit.formats.cpp.CppExpressionWriter method)
(myokit.formats.matlab.MatlabExpressionWriter method)
set_conductance() (myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_conductance_field() (myokit.SimulationOpenCL method)
set_connections() (myokit.SimulationOpenCL method)
set_constant() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Simulation method)
(myokit.SimulationOpenCL method)
set_conversion_factor() (myokit.formats.sbml.Model method)
(myokit.formats.sbml.Species method)
set_cursor() (myokit.gui.source.Editor method)
set_data() (myokit.gui.datablock_viewer.GraphArea method)
set_default_fiber_state() (myokit.FiberTissueSimulation method)
set_default_state() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_default_tissue_state() (myokit.FiberTissueSimulation method)
set_equation() (myokit.formats.cellml.v2.Variable method)
set_extent_units() (myokit.formats.sbml.Model method)
set_fiber_state() (myokit.FiberTissueSimulation method)
set_field() (myokit.SimulationOpenCL method)
set_fixed_form_protocol() (myokit.Simulation method)
set_free_variable() (myokit.formats.cellml.v1.Model method)
set_initial_value() (myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Variable method)
(myokit.formats.sbml.Compartment method)
(myokit.formats.sbml.Parameter method)
(myokit.formats.sbml.Quantity method)
(myokit.formats.sbml.Species method)
(myokit.formats.sbml.SpeciesReference method)
(myokit.Variable method)
set_initial_values() (myokit.Model method)
set_is_state() (myokit.formats.cellml.v1.Variable method)
set_kinetic_law() (myokit.formats.sbml.Reaction method)
set_label() (myokit.Variable method)
set_length_units() (myokit.formats.sbml.Model method)
set_lhs_function() (myokit.formats.ansic.AnsiCExpressionWriter method)
(myokit.formats.ansic.CBasedExpressionWriter method)
(myokit.formats.cellml.CellMLExpressionWriter method)
(myokit.formats.cpp.CppExpressionWriter method)
(myokit.formats.cuda.CudaExpressionWriter method)
(myokit.formats.easyml.EasyMLExpressionWriter method)
(myokit.formats.ExpressionWriter method)
(myokit.formats.latex.LatexExpressionWriter method)
(myokit.formats.mathml.MathMLExpressionWriter method)
(myokit.formats.matlab.MatlabExpressionWriter method)
(myokit.formats.opencl.OpenCLExpressionWriter method)
(myokit.formats.python.NumPyExpressionWriter method)
(myokit.formats.python.PythonExpressionWriter method)
(myokit.formats.stan.StanExpressionWriter method)
(myokit.formats.sympy.SymPyExpressionWriter method)
set_max_step_size() (myokit.Simulation method)
set_membrane_potential() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
set_min_step_size() (myokit.Simulation method)
set_mode() (myokit.formats.cellml.CellMLExpressionWriter method)
(myokit.formats.mathml.MathMLExpressionWriter method)
set_model() (myokit.formats.sympy.SymPyExpressionReader method)
set_name() (myokit.Model method)
set_notes() (myokit.formats.sbml.Model method)
set_output_stream() (myokit.pype.TemplateEngine method)
set_paced_cell_list() (myokit.SimulationOpenCL method)
set_paced_cells() (myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_parameters() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
set_parent() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
set_position() (myokit.gui.datablock_viewer.GraphArea method)
set_positions() (myokit.gui.ide.ModelNavigator method)
set_protocol() (myokit.FiberTissueSimulation method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_rhs() (myokit.formats.cellml.v1.Variable method)
(myokit.Variable method)
set_size_units() (myokit.formats.sbml.Compartment method)
set_spatial_dimensions() (myokit.formats.sbml.Compartment method)
set_state() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Model method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_state_value() (myokit.Variable method)
set_step_size() (myokit.FiberTissueSimulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_substance_units() (myokit.formats.sbml.Model method)
(myokit.formats.sbml.Species method)
set_text() (myokit.gui.source.Editor method)
set_time() (myokit.FiberTissueSimulation method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
set_time_key() (myokit.DataLog method)
set_time_units() (myokit.formats.sbml.Model method)
set_time_variable() (myokit.formats.cellml.CellMLExpressionWriter method)
(myokit.formats.mathml.MathMLExpressionWriter method)
set_time_variable_name() (myokit.formats.latex.LatexExpressionWriter method)
set_tissue_state() (myokit.FiberTissueSimulation method)
set_tolerance() (myokit.Simulation method)
set_unit() (myokit.Variable method)
set_unit_function() (myokit.formats.cellml.CellMLExpressionWriter method)
set_units() (myokit.formats.sbml.Parameter method)
set_value() (myokit.formats.sbml.Compartment method)
(myokit.formats.sbml.Parameter method)
(myokit.formats.sbml.Quantity method)
(myokit.formats.sbml.Species method)
(myokit.formats.sbml.SpeciesReference method)
(myokit.Model method)
set_variable_of_integration() (myokit.formats.cellml.v2.Model method)
set_volume_units() (myokit.formats.sbml.Model method)
shape() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
(myokit.SimulationOpenCL method)
show() (myokit.gui.datalog_viewer.DataLogViewer method)
show_evaluation_of() (myokit.Model method)
show_exception() (myokit.gui.ide.MyokitIDE method)
show_expressions_for() (myokit.Model method)
show_line_of() (myokit.Model method)
si_unit_names() (myokit.formats.cellml.v1.Units class method)
(myokit.formats.cellml.v2.Units class method)
sid() (myokit.formats.sbml.Compartment method)
(myokit.formats.sbml.ModifierSpeciesReference method)
(myokit.formats.sbml.Parameter method)
(myokit.formats.sbml.Reaction method)
(myokit.formats.sbml.Species method)
(myokit.formats.sbml.SpeciesReference method)
Simulation (class in myokit)
Simulation1d (class in myokit)
simulation_times() (in module myokit.lib.plots)
SimulationCancelledError (class in myokit)
SimulationError (class in myokit)
SimulationOpenCL (class in myokit)
SimultaneousProtocolEventError (class in myokit)
Sin (class in myokit)
size() (myokit.LoggedVariableInfo method)
size_units() (myokit.formats.sbml.Compartment method)
sizeHint() (myokit.gui.datablock_viewer.GraphArea method)
(myokit.gui.source.LineNumberArea method)
sizePolicy() (myokit.gui.datablock_viewer.GraphArea method)
solvable_order() (myokit.Model method)
solve() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
sort() (myokit.EquationList method)
source() (myokit.formats.cellml.v1.Variable method)
spatial_dimensions() (myokit.formats.sbml.Compartment method)
Species (class in myokit.formats.sbml)
species() (myokit.formats.sbml.Model method)
(myokit.formats.sbml.ModifierSpeciesReference method)
(myokit.formats.sbml.Reaction method)
(myokit.formats.sbml.SpeciesReference method)
SpeciesReference (class in myokit.formats.sbml)
split() (in module myokit)
(in module myokit.formats.xml)
(myokit.DataLog method)
split_key() (in module myokit)
split_periodic() (myokit.DataLog method)
Sqrt (class in myokit)
StanExporter (class in myokit.formats.stan)
StanExpressionWriter (class in myokit.formats.stan)
start() (myokit.ProtocolEvent method)
state() (myokit.lib.hh.AnalyticalSimulation method)
(myokit.lib.markov.AnalyticalSimulation method)
(myokit.lib.markov.DiscreteSimulation method)
(myokit.Model method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
state_value() (myokit.Variable method)
states() (myokit.lib.hh.HHModel method)
(myokit.lib.markov.LinearModel method)
(myokit.Model method)
steady_state() (myokit.lib.hh.HHModel method)
(myokit.lib.markov.LinearModel method)
step() (in module myokit)
step_size() (myokit.FiberTissueSimulation method)
(myokit.SimulationOpenCL method)
steptrain() (in module myokit.pacing)
steptrain_linear() (in module myokit.pacing)
Stimulus (class in myokit.formats.heka)
stimulus() (myokit.formats.heka.Series method)
stimulus_current() (in module myokit.lib.guess)
stimulus_current_info() (in module myokit.lib.guess)
stimulus_tree() (myokit.formats.heka.PatchMasterFile method)
StimulusChannel (class in myokit.formats.heka)
StimulusFile (class in myokit.formats.heka)
stop() (myokit.ProtocolEvent method)
storage() (myokit.formats.heka.Segment method)
str() (in module myokit.float)
(myokit.formats.heka.EndianAwareReader method)
strfloat() (in module myokit)
strip_expression_units() (in module myokit)
substance_units() (myokit.formats.sbml.Model method)
(myokit.formats.sbml.Species method)
suggest_variable() (myokit.Model method)
Sundials (class in myokit)
support_str() (myokit.formats.heka.StimulusChannel method)
supported() (myokit.formats.heka.StimulusChannel method)
(myokit.OpenCL static method)
supported_channel() (myokit.formats.heka.Stimulus method)
supports_component() (myokit.formats.channelml.ChannelMLImporter method)
(myokit.formats.Importer method)
supports_model() (myokit.formats.cellml.CellML1Exporter method)
(myokit.formats.cellml.CellML2Exporter method)
(myokit.formats.cellml.CellMLExporter method)
(myokit.formats.cellml.CellMLImporter method)
(myokit.formats.channelml.ChannelMLImporter method)
(myokit.formats.easyml.EasyMLExporter method)
(myokit.formats.Exporter method)
(myokit.formats.html.HTMLExporter method)
(myokit.formats.Importer method)
(myokit.formats.latex.PdfExporter method)
(myokit.formats.latex.PosterExporter method)
(myokit.formats.sbml.SBMLImporter method)
(myokit.formats.xml.XMLExporter method)
supports_protocol() (myokit.formats.axon.AbfImporter method)
(myokit.formats.heka.PatchMasterImporter method)
(myokit.formats.Importer method)
supports_runnable() (myokit.formats.cellml.CellML1Exporter method)
(myokit.formats.cellml.CellML2Exporter method)
(myokit.formats.cellml.CellMLExporter method)
(myokit.formats.easyml.EasyMLExporter method)
(myokit.formats.Exporter method)
(myokit.formats.html.HTMLExporter method)
(myokit.formats.TemplatedRunnableExporter method)
(myokit.formats.xml.XMLExporter method)
Sweep (class in myokit.formats.axon)
(class in myokit.formats.heka)
sweep_count() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.heka.Stimulus method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
sweep_durations() (myokit.formats.heka.Stimulus method)
(myokit.formats.heka.StimulusChannel method)
sweep_interval() (myokit.formats.heka.Stimulus method)
sweep_order() (myokit.formats.heka.SegmentIncrement method)
sweep_samples() (myokit.formats.heka.Stimulus method)
(myokit.formats.heka.StimulusChannel method)
sweep_values() (myokit.formats.heka.SegmentIncrement method)
SweepSource (class in myokit.formats)
SweepSourceTab (class in myokit.gui.datalog_viewer)
SymPyExpressionReader (class in myokit.formats.sympy)
SymPyExpressionWriter (class in myokit.formats.sympy)
system() (in module myokit)
T
TabbedToolBar (class in myokit.gui.ide)
TabWidget (class in myokit.gui.datalog_viewer)
tail() (myokit.Protocol method)
Tan (class in myokit)
TemplatedRunnableExporter (class in myokit.formats)
TemplateEngine (class in myokit.pype)
text() (myokit.lib.deps.DiGraph method)
(myokit.ModelComparison method)
(myokit.tools.capture method)
time() (in module myokit)
(in module myokit.lib.multi)
(myokit.DataBlock1d method)
(myokit.DataBlock2d method)
(myokit.DataLog method)
(myokit.FiberTissueSimulation method)
(myokit.formats.heka.EndianAwareReader method)
(myokit.formats.heka.PulsedFile method)
(myokit.formats.heka.Series method)
(myokit.formats.heka.Sweep method)
(myokit.formats.sbml.Model method)
(myokit.Model method)
(myokit.PacingSystem method)
(myokit.Simulation method)
(myokit.Simulation1d method)
(myokit.SimulationOpenCL method)
(myokit.tools.Benchmarker method)
time_key() (myokit.DataLog method)
time_unit() (myokit.formats.axon.AbfFile method)
(myokit.formats.heka.Series method)
(myokit.formats.heka.Trace method)
(myokit.formats.SweepSource method)
(myokit.formats.wcp.WcpFile method)
(myokit.Model method)
time_units() (myokit.formats.sbml.Model method)
Timeout (class in myokit)
times() (myokit.formats.axon.Channel method)
(myokit.formats.heka.Trace method)
(myokit.formats.wcp.WcpFile method)
(myokit.TimeSeriesProtocol method)
TimeSeriesProtocol (class in myokit)
timex() (myokit.Model method)
tissue_shape() (myokit.FiberTissueSimulation method)
tissue_state() (myokit.FiberTissueSimulation method)
to_log() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
toggle() (myokit.gui.ide.TabbedToolBar method)
toggle_comment() (myokit.gui.source.Editor method)
token() (myokit.IncompatibleUnitError method)
(myokit.IntegrityError method)
Trace (class in myokit.formats.heka)
trace() (myokit.DataBlock1d method)
(myokit.DataBlock2d method)
tree_str() (myokit.Expression method)
TreeNode (class in myokit.formats.heka)
trim() (myokit.DataLog method)
trim_left() (myokit.DataLog method)
trim_right() (myokit.DataLog method)
trim_trailing_whitespace() (myokit.gui.source.Editor method)
TxtTab (class in myokit.gui.datalog_viewer)
U
uid_or_node() (myokit.lib.deps.DiGraph method)
uname() (myokit.Component method)
(myokit.ModelPart method)
(myokit.Variable method)
Unit (class in myokit)
unit() (in module myokit.lib.multi)
(myokit.formats.axon.Channel method)
(myokit.formats.heka.StimulusChannel method)
(myokit.formats.sbml.Model method)
(myokit.Number method)
(myokit.Quantity method)
(myokit.Variable method)
Units (class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
units() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v1.Variable method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.cellml.v2.Variable method)
(myokit.formats.sbml.Parameter method)
UnitsError (class in myokit.formats.cellml.v1)
UnresolvedReferenceError (class in myokit)
UnsupportedBaseUnitsError (class in myokit.formats.cellml.v1)
UnsupportedUnitOffsetError (class in myokit.formats.cellml.v1)
UnusedVariableError (class in myokit)
update() (myokit.gui.progress.ProgressBarReporter method)
(myokit.ProgressPrinter method)
(myokit.ProgressReporter method)
(myokit.Timeout method)
update_contents() (myokit.gui.source.LineNumberArea method)
update_navigator() (myokit.gui.ide.MyokitIDE method)
update_recent_files_menu() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.ide.MyokitIDE method)
update_width() (myokit.gui.source.LineNumberArea method)
update_window_title() (myokit.gui.datablock_viewer.DataBlockViewer method)
(myokit.gui.ide.MyokitIDE method)
user_functions() (myokit.Model method)
UserFunction (class in myokit)
V
v_off() (myokit.formats.heka.AmplifierState method)
validate() (myokit.Component method)
(myokit.DataLog method)
(myokit.Expression method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
(myokit.Model method)
(myokit.Variable method)
value() (myokit.formats.sbml.Compartment method)
(myokit.formats.sbml.Parameter method)
(myokit.formats.sbml.Quantity method)
(myokit.formats.sbml.Species method)
(myokit.formats.sbml.SpeciesReference method)
(myokit.If method)
(myokit.Model method)
(myokit.Number method)
(myokit.Quantity method)
(myokit.Variable method)
value_at_times() (myokit.Protocol method)
value_base() (myokit.formats.heka.Segment method)
value_delta() (myokit.formats.heka.Segment method)
value_factor() (myokit.formats.heka.Segment method)
value_increment_mode() (myokit.formats.heka.Segment method)
value_source() (myokit.formats.cellml.v1.Variable method)
value_unit() (myokit.formats.heka.Trace method)
values() (myokit.formats.axon.AtfFile method)
(myokit.formats.axon.Channel method)
(myokit.formats.heka.Segment method)
(myokit.formats.heka.Trace method)
(myokit.formats.wcp.WcpFile method)
(myokit.TimeSeriesProtocol method)
var() (myokit.Component method)
(myokit.Derivative method)
(myokit.EquationList method)
(myokit.InitialValue method)
(myokit.LhsExpression method)
(myokit.Model method)
(myokit.Name method)
(myokit.PartialDerivative method)
(myokit.Variable method)
(myokit.VarProvider method)
VarGrapher (class in myokit.gui.vargrapher)
Variable (class in myokit)
(class in myokit.formats.cellml.v1)
(class in myokit.formats.cellml.v2)
variable() (myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
variable_info() (myokit.DataLog method)
variable_of_integration() (myokit.formats.cellml.v2.Model method)
VariableMappingError (class in myokit)
variables() (myokit.Component method)
(myokit.EquationList method)
(myokit.formats.cellml.v1.Component method)
(myokit.formats.cellml.v2.Component method)
(myokit.Model method)
(myokit.Variable method)
(myokit.VarProvider method)
VarOwner (class in myokit)
VarProvider (class in myokit)
version() (in module myokit)
(myokit.formats.axon.AbfFile method)
(myokit.formats.axon.AtfFile method)
(myokit.formats.cellml.v1.Model method)
(myokit.formats.cellml.v2.Model method)
(myokit.formats.heka.AmplifierFile method)
(myokit.formats.heka.PatchMasterFile method)
(myokit.formats.heka.PulsedFile method)
(myokit.formats.heka.StimulusFile method)
(myokit.formats.wcp.WcpFile method)
(myokit.Sundials static method)
VideoScene (class in myokit.gui.datablock_viewer)
VideoView (class in myokit.gui.datablock_viewer)
volume_units() (myokit.formats.sbml.Model method)
W
walk() (myokit.Expression method)
warnings() (myokit.Model method)
was_cancelled() (myokit.gui.progress.ProgressBar method)
WcpFile (class in myokit.formats.wcp)
WcpTab (class in myokit.gui.datalog_viewer)
with_traceback() (myokit.formats.sbml.SBMLError method)
write() (in module myokit.formats.sympy)
(myokit.formats.cellml.v1.CellMLWriter method)
(myokit.formats.cellml.v2.CellMLWriter method)
(myokit.gui.ide.Console method)
write_file() (in module myokit.formats.cellml.v1)
(in module myokit.formats.cellml.v2)
(myokit.formats.cellml.v1.CellMLWriter method)
(myokit.formats.cellml.v2.CellMLWriter method)
write_string() (in module myokit.formats.cellml.v1)
(in module myokit.formats.cellml.v2)
(myokit.formats.cellml.v1.CellMLWriter method)
(myokit.formats.cellml.v2.CellMLWriter method)
X
XMLExporter (class in myokit.formats.xml)
Z
zero_segment() (myokit.formats.heka.StimulusChannel method)